CDS

Accession Number TCMCG051C30136
gbkey CDS
Protein Id XP_024465136.1
Location join(9541919..9543325,9543425..9543562,9546561..9546632,9547602..9547643,9547847..9547936,9548132..9548239,9548337..9548429,9548562..9548641,9548734..9549463)
Gene LOC18102464
GeneID 18102464
Organism Populus trichocarpa

Protein

Length 919aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024609368.1
Definition splicing factor U2af large subunit B [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description Splicing factor U2AF
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12837        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000243        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008187        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0030628        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032239        [VIEW IN EMBL-EBI]
GO:0032241        [VIEW IN EMBL-EBI]
GO:0032386        [VIEW IN EMBL-EBI]
GO:0032388        [VIEW IN EMBL-EBI]
GO:0032879        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036002        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046822        [VIEW IN EMBL-EBI]
GO:0046824        [VIEW IN EMBL-EBI]
GO:0046831        [VIEW IN EMBL-EBI]
GO:0046833        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0051049        [VIEW IN EMBL-EBI]
GO:0051050        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0060341        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0089701        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATGAGCAGATCCAGTCGGCATAAAGACAAGTATGGAAGAAGTAGTGAGATGTCTCAAGATCACCAGTATGAAGGAACTGCTGCACGGACTAGACCGTTCAGCTTTGATGAGATTATGTCTATAAGGAAAAACAAGAAAGCATCTGAAATTTTGGAAGGAGAATTAAAAGATATATTAGGAGGTGTTATTAATGAGAAAGCTTCTGATCATAGATCTGAAAGGGGTAATGGCCACAATGAAGAATCTTCAACTGGTCTCCGACAGCACTTGTCAGAGGAACATGGCAAGGCGAGTTACAGAAAAAAAGAAGATAATGTTTCCATGAAGGAGGATTATATAGCCAAAGGCAGAGATAGGGATGTTCGAGATTCAGAAACAAAATCAAAGGCCAAAATGAACGAAGATATGAGAACTGAAGTTAAAGAAAAGACTAATGAAAAAATTCATGACAGGAGAAAAGGTGATAAGCGGCCAAGCAATATTTCTGAAAGCGAAGCTGTGAAGAAGCATTCAAGAGAGGTGCAGAAAGATAGACATGTGGACAAAAGTAGAGGAAAATCTGAAAGAGAAAGAAAGGAAAAATACAGGAATGGTATTGATGATAAAAGTAGAGACAGGAATGCTGCAAAGAAACATGATTTAGGAAAAGGGCATCATTTAGAAACTTCTGAGAGAAAGGAAAGGAAGGAATCTTCAAAATCTCATCATGAAGAATTAAGGCTGAAAAGGAGACGATCAAGGAGCCGAGAGCACGAGGACAGAAATAGAAGGTCTATTTCACTCTCACCAAGGGCTCACAAACGTGGTTCTTATCACAAAAGAGAACATGTGGAATTGTCCTCGCATTCTGTCAAAGAAAGGTCTGGACGACAACAATCTGATGCTGAAAATAACCAACTTACAAACAGTAGTTCTAGTAGGCATCAGAGGAGACATGGTGGCTTTGCAAGTGGGCTTGGTGGCTATTCACCAAGGAAGAGAAAAACTGAGGCCGCTATTAAGACTCCTTCCCCAGCTAAACGCTCACCAGAGAAGAAAAGTGCTAAATGGGACCTTGCACCAGAAGAAACAAACAATGTCTTTCCTGCTGTGATTCTCTCTAATTTTCAATCACCAAACCAAACTGCTTCTTCAAATATACATGAAGTGGTCAGTGCTGTTCCTGTTGTTTCAGCTCCAATGAAGCCTCTTTCCGGGGTTTCACTCAGTTCTTTGTCAACCGCTATGAAAGTCGCCACTGAATCCATTCAACTTACACAAGCGACCCATCCTATAAGGAGGCTTTATATGGAGAACATTCCAGCTTCAGCCTCAGAGAAAGCTGTGATGGACTGTCTTAATAACTTTTTGATTTCTTCAGGCGTCCATCATATCCAAGGAACCCAACCATGTATAAGCTGCATTAGGCAAAAAGAAAAGGGCCAAGCTCTTGTGGAATTTCTGACTCCAGAGGATGCTTCAGCAGCTCTCTCTTTTGATGGCTGTTCCTTCTCAGGCTCCATTATCAAAGTCAGACGGCCCAAAGACTTTATTGAAGTGGCAACTGGTGAACTAGAAAAATCAGCAGCTGCAATTGATGCAATTGGTGATATTGTTAAGGATTCACCTCACAAGATTTTCATTGGTGGAATTTCAAAGGTTCTTTCTTCTAAAATGCTCATGGAGATTGCTAGTGCCTTTGGACCTCTGAAGGCATACCAGTTTGAGAATAGTAAAGATCCTGATGAGCCATTTGCCTTCCTAGAGTATGCAGACGAATCGGTTACTTTCAAGGCTTGTGCGGGTCTCAATGGTATGAAGTTAGGAGGGCAAGTAATAACTGCCATTCAAGCTGTTCCAAATGCATCCTCCTCGGGAAGTGATGGAAATTCACAATTTGGCCAGATCTCTCAGCATGCAAAGGCACTTCTTGAGAAGCCTACAGAAGTCTTAAAGCTTAAAAATGTGTTTGATTCAGAAAGCCTTTCATCCCTATCTAACACGGAAGTTGAAGAAGTATTGGAAGATGTGCGTTTAGAGTGTGCCAGGTTTGGCTCTGTTAAATCCATTAATGTTGTCAAGTATGCTGCAATTACCATATCCACTTCAAAATCATGCGAATTCAATGATGATACGGTATCTGCTGAAGCTACACAAAGCTTAGGCTGTGATGGAACAAATCCTAAAACAAGGAACATCAGAGGATCTATTGACCAAAAGTTTATGGAAGGCAACGGCATTGGTGATGATAAACCAGCAAGTGATGTCATGGAGGATGAGCCATGCCAACCAGGTCAGGTTGACAGTGATATGGCTGTTCAAGACTTAGCATGCAAGAGTTCATCTGATTCTCAAGAACCCCCTCAAGATGTGTCAGACAGCAATGTTGACAAGGTCACTGATGACATTGAAATTGAGGAAGTCGATGTGGAAAACAAATCAACAGCTGGAGAAGATTTGAATTTGAAGGAGGTGGGAGATAACAAATTAATGGCTGGAGAAGAGTTGAATCTGGAGGAAGTCAGTGGAGATGTTGAAAAGGCTATTGTGAATGATAGCATGGAAATGAAACCAAATTCTATTGAGAAGGGAGATTGCAAGGAACAGGATTGTAATCTTGGACTCATTTTTGAGCGGGGATGTGTTTTTGTGGAGTTCAGAAGAACAGAAGCCGCATGCATGGCAGCGCATTGTTTACATGGAAGGTTATTTGATGACCGTGCTGTGGTGGTGGAATATTTTCCTCTTGATATTTACCTTGCCAGATTCCCGAAGTGA
Protein:  
MMSRSSRHKDKYGRSSEMSQDHQYEGTAARTRPFSFDEIMSIRKNKKASEILEGELKDILGGVINEKASDHRSERGNGHNEESSTGLRQHLSEEHGKASYRKKEDNVSMKEDYIAKGRDRDVRDSETKSKAKMNEDMRTEVKEKTNEKIHDRRKGDKRPSNISESEAVKKHSREVQKDRHVDKSRGKSERERKEKYRNGIDDKSRDRNAAKKHDLGKGHHLETSERKERKESSKSHHEELRLKRRRSRSREHEDRNRRSISLSPRAHKRGSYHKREHVELSSHSVKERSGRQQSDAENNQLTNSSSSRHQRRHGGFASGLGGYSPRKRKTEAAIKTPSPAKRSPEKKSAKWDLAPEETNNVFPAVILSNFQSPNQTASSNIHEVVSAVPVVSAPMKPLSGVSLSSLSTAMKVATESIQLTQATHPIRRLYMENIPASASEKAVMDCLNNFLISSGVHHIQGTQPCISCIRQKEKGQALVEFLTPEDASAALSFDGCSFSGSIIKVRRPKDFIEVATGELEKSAAAIDAIGDIVKDSPHKIFIGGISKVLSSKMLMEIASAFGPLKAYQFENSKDPDEPFAFLEYADESVTFKACAGLNGMKLGGQVITAIQAVPNASSSGSDGNSQFGQISQHAKALLEKPTEVLKLKNVFDSESLSSLSNTEVEEVLEDVRLECARFGSVKSINVVKYAAITISTSKSCEFNDDTVSAEATQSLGCDGTNPKTRNIRGSIDQKFMEGNGIGDDKPASDVMEDEPCQPGQVDSDMAVQDLACKSSSDSQEPPQDVSDSNVDKVTDDIEIEEVDVENKSTAGEDLNLKEVGDNKLMAGEELNLEEVSGDVEKAIVNDSMEMKPNSIEKGDCKEQDCNLGLIFERGCVFVEFRRTEAACMAAHCLHGRLFDDRAVVVEYFPLDIYLARFPK